[ruby-core:122633] [Ruby Bug#21462] [ruby-head] bundler crashes because default gems (json, openssl, optparse) having bloated spec.files containing files from other gems

Issue #21462 has been updated by ntkme (Natsuki Natsume). Root cause seems to be https://github.com/ruby/ruby/pull/13724 ---------------------------------------- Bug #21462: [ruby-head] bundler crashes because default gems (json, openssl, optparse) having bloated spec.files containing files from other gems https://bugs.ruby-lang.org/issues/21462#change-113904 * Author: ntkme (Natsuki Natsume) * Status: Open * ruby -v: ruby 3.5.0dev (2025-06-30T18:15:00Z master 99360e500d) +PRISM [arm64-darwin24] * Backport: 3.2: UNKNOWN, 3.3: UNKNOWN, 3.4: UNKNOWN ---------------------------------------- This is causing ruby-dev-builder to fail in the past few days. E.g. https://github.com/ruby/ruby-dev-builder/actions/runs/15981482361/job/450766... Minimum reproduction: ``` # Gemfile source 'https://rubygems.org' gem 'json', '2.2.0' ``` ``` bundle bundle exec bundle --version ``` Error message: ``` /opt/homebrew/Cellar/ruby/HEAD-99360e5/lib/ruby/3.5.0+2/bundler/runtime.rb:317:in 'Bundler::Runtime#check_for_activated_spec!': You have already activated json 2.12.2, but your Gemfile requires json 2.2.0. Since json is a default gem, you can either remove your dependency on it or try updating to a newer version of bundler that supports json as a default gem. (Gem::LoadError) ``` After manual inspection, I found that the default gem spec of json is broken, that it includes tons of files from other gems. ``` $ grep -a 's.files =' /opt/homebrew/Cellar/ruby/HEAD-99360e5/lib/ruby/gems/3.5.0+2/specifications/default/json-2.12.2.gemspec s.files = ["BSDL".freeze, "CHANGES.md".freeze, "COPYING".freeze, "LEGAL".freeze, "README.md".freeze, "ext/json/extconf.h".freeze, "ext/json/extconf.rb".freeze, "ext/json/fbuffer/fbuffer.h".freeze, "ext/json/generator/extconf.h".freeze, "ext/json/generator/extconf.rb".freeze, "ext/json/generator/generator.c".freeze, "ext/json/lib/json.rb".freeze, "ext/json/lib/json/add/bigdecimal.rb".freeze, "ext/json/lib/json/add/complex.rb".freeze, "ext/json/lib/json/add/core.rb".freeze, "ext/json/lib/json/add/date.rb".freeze, "ext/json/lib/json/add/date_time.rb".freeze, "ext/json/lib/json/add/exception.rb".freeze, "ext/json/lib/json/add/ostruct.rb".freeze, "ext/json/lib/json/add/range.rb".freeze, "ext/json/lib/json/add/rational.rb".freeze, "ext/json/lib/json/add/regexp.rb".freeze, "ext/json/lib/json/add/set.rb".freeze, "ext/json/lib/json/add/struct.rb".freeze, "ext/json/lib/json/add/symbol.rb".freeze, "ext/json/lib/json/add/time.rb".freeze, "ext/json/lib/json/common.rb".freeze, "ext/json/lib/json/ext.rb".freeze, "ext/json/lib/json/ext/generator/state.rb".freeze, "ext/json/lib/json/generic_object.rb".freeze, "ext/json/lib/json/version.rb".freeze, "ext/json/parser/extconf.h".freeze, "ext/json/parser/extconf.rb".freeze, "ext/json/parser/parser.c".freeze, "ext/json/simd/conf.rb".freeze, "ext/json/simd/simd.h".freeze, "ext/json/vendor/fpconv.c".freeze, "ext/json/vendor/jeaiii-ltoa.h".freeze, "json.gemspec".freeze, "lib/English.rb".freeze, "lib/bundled_gems.rb".freeze, "lib/bundler.rb".freeze, "lib/bundler/build_metadata.rb".freeze, "lib/bundler/capistrano.rb".freeze, "lib/bundler/checksum.rb".freeze, "lib/bundler/ci_detector.rb".freeze, "lib/bundler/cli.rb".freeze, 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"lib/rubygems/requirement.rb".freeze, "lib/rubygems/resolver.rb".freeze, "lib/rubygems/resolver/activation_request.rb".freeze, "lib/rubygems/resolver/api_set.rb".freeze, "lib/rubygems/resolver/api_set/gem_parser.rb".freeze, "lib/rubygems/resolver/api_specification.rb".freeze, "lib/rubygems/resolver/best_set.rb".freeze, "lib/rubygems/resolver/composed_set.rb".freeze, "lib/rubygems/resolver/conflict.rb".freeze, "lib/rubygems/resolver/current_set.rb".freeze, "lib/rubygems/resolver/dependency_request.rb".freeze, "lib/rubygems/resolver/git_set.rb".freeze, "lib/rubygems/resolver/git_specification.rb".freeze, "lib/rubygems/resolver/index_set.rb".freeze, "lib/rubygems/resolver/index_specification.rb".freeze, "lib/rubygems/resolver/installed_specification.rb".freeze, "lib/rubygems/resolver/installer_set.rb".freeze, "lib/rubygems/resolver/local_specification.rb".freeze, "lib/rubygems/resolver/lock_set.rb".freeze, "lib/rubygems/resolver/lock_specification.rb".freeze, "lib/rubygems/resolver/requirement_list.rb".freeze, "lib/rubygems/resolver/set.rb".freeze, "lib/rubygems/resolver/source_set.rb".freeze, "lib/rubygems/resolver/spec_specification.rb".freeze, "lib/rubygems/resolver/specification.rb".freeze, "lib/rubygems/resolver/stats.rb".freeze, "lib/rubygems/resolver/vendor_set.rb".freeze, "lib/rubygems/resolver/vendor_specification.rb".freeze, "lib/rubygems/s3_uri_signer.rb".freeze, "lib/rubygems/safe_marshal.rb".freeze, "lib/rubygems/safe_marshal/elements.rb".freeze, "lib/rubygems/safe_marshal/reader.rb".freeze, "lib/rubygems/safe_marshal/visitors/stream_printer.rb".freeze, "lib/rubygems/safe_marshal/visitors/to_ruby.rb".freeze, "lib/rubygems/safe_marshal/visitors/visitor.rb".freeze, "lib/rubygems/safe_yaml.rb".freeze, "lib/rubygems/security.rb".freeze, "lib/rubygems/security/policies.rb".freeze, "lib/rubygems/security/policy.rb".freeze, "lib/rubygems/security/signer.rb".freeze, "lib/rubygems/security/trust_dir.rb".freeze, "lib/rubygems/security_option.rb".freeze, "lib/rubygems/source.rb".freeze, "lib/rubygems/source/git.rb".freeze, "lib/rubygems/source/installed.rb".freeze, "lib/rubygems/source/local.rb".freeze, "lib/rubygems/source/lock.rb".freeze, "lib/rubygems/source/specific_file.rb".freeze, "lib/rubygems/source/vendor.rb".freeze, "lib/rubygems/source_list.rb".freeze, "lib/rubygems/spec_fetcher.rb".freeze, "lib/rubygems/specification.rb".freeze, "lib/rubygems/specification_policy.rb".freeze, "lib/rubygems/specification_record.rb".freeze, "lib/rubygems/stub_specification.rb".freeze, "lib/rubygems/target_rbconfig.rb".freeze, "lib/rubygems/text.rb".freeze, "lib/rubygems/uninstaller.rb".freeze, "lib/rubygems/unknown_command_spell_checker.rb".freeze, "lib/rubygems/update_suggestion.rb".freeze, "lib/rubygems/uri.rb".freeze, "lib/rubygems/uri_formatter.rb".freeze, "lib/rubygems/user_interaction.rb".freeze, "lib/rubygems/util.rb".freeze, "lib/rubygems/util/licenses.rb".freeze, "lib/rubygems/util/list.rb".freeze, "lib/rubygems/validator.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/delegates/resolution_state.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/delegates/specification_provider.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/dependency_graph.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/dependency_graph/action.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/dependency_graph/add_edge_no_circular.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/dependency_graph/add_vertex.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/dependency_graph/delete_edge.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/dependency_graph/detach_vertex_named.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/dependency_graph/log.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/dependency_graph/set_payload.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/dependency_graph/tag.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/dependency_graph/vertex.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/errors.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/gem_metadata.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/modules/specification_provider.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/modules/ui.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/resolution.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/resolver.rb".freeze, "lib/rubygems/vendor/molinillo/lib/molinillo/state.rb".freeze, "lib/rubygems/vendor/net-http/lib/net/http.rb".freeze, "lib/rubygems/vendor/net-http/lib/net/http/exceptions.rb".freeze, "lib/rubygems/vendor/net-http/lib/net/http/generic_request.rb".freeze, "lib/rubygems/vendor/net-http/lib/net/http/header.rb".freeze, "lib/rubygems/vendor/net-http/lib/net/http/proxy_delta.rb".freeze, "lib/rubygems/vendor/net-http/lib/net/http/request.rb".freeze, "lib/rubygems/vendor/net-http/lib/net/http/requests.rb".freeze, "lib/rubygems/vendor/net-http/lib/net/http/response.rb".freeze, "lib/rubygems/vendor/net-http/lib/net/http/responses.rb".freeze, "lib/rubygems/vendor/net-http/lib/net/http/status.rb".freeze, "lib/rubygems/vendor/net-http/lib/net/https.rb".freeze, "lib/rubygems/vendor/net-protocol/lib/net/protocol.rb".freeze, "lib/rubygems/vendor/optparse/lib/optionparser.rb".freeze, "lib/rubygems/vendor/optparse/lib/optparse.rb".freeze, "lib/rubygems/vendor/optparse/lib/optparse/ac.rb".freeze, "lib/rubygems/vendor/optparse/lib/optparse/date.rb".freeze, "lib/rubygems/vendor/optparse/lib/optparse/kwargs.rb".freeze, "lib/rubygems/vendor/optparse/lib/optparse/shellwords.rb".freeze, "lib/rubygems/vendor/optparse/lib/optparse/time.rb".freeze, "lib/rubygems/vendor/optparse/lib/optparse/uri.rb".freeze, "lib/rubygems/vendor/optparse/lib/optparse/version.rb".freeze, "lib/rubygems/vendor/resolv/lib/resolv.rb".freeze, "lib/rubygems/vendor/securerandom/lib/securerandom.rb".freeze, "lib/rubygems/vendor/timeout/lib/timeout.rb".freeze, "lib/rubygems/vendor/tsort/lib/tsort.rb".freeze, "lib/rubygems/vendor/uri/lib/uri.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/common.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/file.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/ftp.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/generic.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/http.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/https.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/ldap.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/ldaps.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/mailto.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/rfc2396_parser.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/rfc3986_parser.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/version.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/ws.rb".freeze, "lib/rubygems/vendor/uri/lib/uri/wss.rb".freeze, "lib/rubygems/vendored_molinillo.rb".freeze, "lib/rubygems/vendored_net_http.rb".freeze, "lib/rubygems/vendored_optparse.rb".freeze, "lib/rubygems/vendored_securerandom.rb".freeze, "lib/rubygems/vendored_timeout.rb".freeze, "lib/rubygems/vendored_tsort.rb".freeze, "lib/rubygems/version.rb".freeze, "lib/rubygems/version_option.rb".freeze, "lib/rubygems/yaml_serializer.rb".freeze, "lib/securerandom.rb".freeze, "lib/shellwords.rb".freeze, "lib/singleton.rb".freeze, "lib/syntax_suggest.rb".freeze, "lib/syntax_suggest/api.rb".freeze, "lib/syntax_suggest/around_block_scan.rb".freeze, "lib/syntax_suggest/block_expand.rb".freeze, "lib/syntax_suggest/capture/before_after_keyword_ends.rb".freeze, "lib/syntax_suggest/capture/falling_indent_lines.rb".freeze, "lib/syntax_suggest/capture_code_context.rb".freeze, "lib/syntax_suggest/clean_document.rb".freeze, "lib/syntax_suggest/cli.rb".freeze, "lib/syntax_suggest/code_block.rb".freeze, "lib/syntax_suggest/code_frontier.rb".freeze, "lib/syntax_suggest/code_line.rb".freeze, "lib/syntax_suggest/code_search.rb".freeze, "lib/syntax_suggest/core_ext.rb".freeze, "lib/syntax_suggest/display_code_with_line_numbers.rb".freeze, "lib/syntax_suggest/display_invalid_blocks.rb".freeze, "lib/syntax_suggest/explain_syntax.rb".freeze, "lib/syntax_suggest/left_right_lex_count.rb".freeze, "lib/syntax_suggest/lex_all.rb".freeze, "lib/syntax_suggest/lex_value.rb".freeze, "lib/syntax_suggest/mini_stringio.rb".freeze, "lib/syntax_suggest/parse_blocks_from_indent_line.rb".freeze, "lib/syntax_suggest/pathname_from_message.rb".freeze, "lib/syntax_suggest/priority_engulf_queue.rb".freeze, "lib/syntax_suggest/priority_queue.rb".freeze, "lib/syntax_suggest/ripper_errors.rb".freeze, "lib/syntax_suggest/scan_history.rb".freeze, "lib/syntax_suggest/unvisited_lines.rb".freeze, "lib/syntax_suggest/version.rb".freeze, "lib/tempfile.rb".freeze, "lib/time.rb".freeze, "lib/timeout.rb".freeze, "lib/tmpdir.rb".freeze, "lib/tsort.rb".freeze, "lib/un.rb".freeze, "lib/unicode_normalize/normalize.rb".freeze, "lib/unicode_normalize/tables.rb".freeze, "lib/uri.rb".freeze, "lib/uri/common.rb".freeze, "lib/uri/file.rb".freeze, "lib/uri/ftp.rb".freeze, "lib/uri/generic.rb".freeze, "lib/uri/http.rb".freeze, "lib/uri/https.rb".freeze, "lib/uri/ldap.rb".freeze, "lib/uri/ldaps.rb".freeze, "lib/uri/mailto.rb".freeze, "lib/uri/rfc2396_parser.rb".freeze, "lib/uri/rfc3986_parser.rb".freeze, "lib/uri/version.rb".freeze, "lib/uri/ws.rb".freeze, "lib/uri/wss.rb".freeze, "lib/weakref.rb".freeze, "lib/yaml.rb".freeze, "lib/yaml/dbm.rb".freeze, "lib/yaml/store.rb".freeze] ``` In addition, "json" is not the only gemspec that's broken. In total I found 3 of them to be broken: - json-2.12.2.gemspec - openssl-3.3.0.gemspec - optparse-0.7.0.dev.2.gemspec The commonality among these gemspec is that they all have `Dir["lib/**/*"]` or some similar patterns, and due to the all default gems are installed in a single shared directory, the glob pattern is including files from other gems. -- https://bugs.ruby-lang.org/